Organize For the Season - Now that you know what's staying in your shed, you must consider when you use the items. You don't want to move a stack of gardening tools just to get to the snow shovels you'll need in the winter. If possible, dedicate one side of the shed to warm-weather specific equipment and the other to cold-weather equipment. This will alleviate any confusion on where items are and save yourself plenty of time when working.
Utilized Pegboards - Pegboards are a great tool that can be used almost anywhere in the home for organization. The same is true for your shed. For small tools, such as hand shovels and rakes, attach a pegboard to a wall and use various hooks and hangers to place hand tools and other items on. This gets them off the ground, out of the way and in a consistent spot that is easy to find.